Taxonomy and organism identity
Confirm accepted names, taxonomy identifiers, lineages, and links to molecular records.
1 toolBioCompLab tools hub
Integrated bioinformatics access without hiding the source.
These wrappers provide a common BioCompLab interface for public bioinformatics, computational biology, genomics, proteomics, structural biology, metabolomics, and pathway services. All tools are public in this first phase, while recommended future access levels are already recorded.
Genomes, RefSeq, GenBank, and annotations
Search genome assemblies, retrieve records, inspect annotations, and prepare downloads.
5 toolsDNA, RNA, and protein comparison
Run similarity searches, prepare alignments, and compare biological sequences.
1 toolProtein function and domains
Retrieve protein records, sequence features, functional annotations, domains, and cross-references.
4 toolsProteomics repositories and evidence
Search proteomics projects, peptide evidence, mass-spectrometry studies, and protein-level datasets.
1 toolProtein structure and molecular visualization
Find experimental and predicted structures and launch molecular visualization workflows.
4 toolsBiochemical and metabolic pathways
Search curated pathways, reactions, compounds, enzymes, and cross-database pathway evidence.
4 toolsMetabolomics and chemical entities
Resolve compounds, identifiers, chemical descriptors, and metabolomics study resources.
4 toolsMetagenomics and microbiome resources
Search microbiome studies, metagenomic assemblies, environmental samples, and analysis resources.
1 toolInteraction and association networks
Search molecular interaction, functional association, and systems-biology network resources.
1 toolComputational models and simulations
Find pathway models, SBML resources, and model metadata for computational biology workflows.
1 toolLiterature and evidence
Search publications, identifiers, and evidence trails connected to biological entities.
3 toolsGenome and pathway visualization
Open genome browsers, feature viewers, molecular viewers, and pathway diagrams.
1 toolBioengineering and synthetic biology support
Conceptual design support and links to responsible, non-operational engineering resources.
1 toolAvailable wrappers
Taxonomy and organism identity
apiNCBI Taxonomy Lookup
Resolve organism names or taxonomy identifiers against the curated NCBI Taxonomy database.
Genomes, RefSeq, GenBank, and annotations
apiNCBI Entrez Search
Search NCBI Entrez databases such as nucleotide, protein, assembly, gene, genome, and PubMed.
DNA, RNA, and protein comparison
queued-jobNCBI BLAST
Submit a public BLAST job through the NCBI URL API and return the RID plus status and result links.
Genomes, RefSeq, GenBank, and annotations
apiNCBI Datasets Genome Search
Retrieve NCBI Datasets assembly reports and prepare genome package download URLs for assembly accessions.
Genomes, RefSeq, GenBank, and annotations
apiENA Portal Search
Search ENA assemblies, reads, samples, studies, and sequence records using the ENA Portal API.
Genomes, RefSeq, GenBank, and annotations
apiEMBL-EBI BioSamples Search
Search sample metadata linked to ENA, BioStudies, PRIDE, MetaboLights, and other omics archives.
Protein function and domains
apiUniProt Protein Lookup
Retrieve protein names, organism, sequence, function, Gene Ontology annotations, and database cross-references.
Protein function and domains
apiEMBL-EBI Proteins Feature Lookup
Retrieve UniProt-derived protein records, sequence metadata, and feature annotations from the EBI Proteins API.
Protein function and domains
apiInterPro Domain Lookup
Retrieve protein family, domain, and functional site annotations from InterPro for a UniProt accession.
Protein function and domains
apiQuickGO Term Search
Search Gene Ontology terms and definitions for biological process, molecular function, and cellular component annotation.
Proteomics repositories and evidence
apiPRIDE Proteomics Project Search
Search public mass-spectrometry proteomics projects and evidence metadata in PRIDE Archive.
Protein structure and molecular visualization
apiAlphaFold DB Structure Lookup
Find predicted protein structures, confidence metadata, and structure download links by UniProt accession.
Protein structure and molecular visualization
apiRCSB PDB Structure Lookup
Retrieve metadata for experimental and computed macromolecular structures by PDB or CSM identifier.
Protein structure and molecular visualization
apiPDBe Structure Summary
Retrieve PDBe entry summaries, deposition metadata, experimental methods, and structure links by PDB ID.
Biochemical and metabolic pathways
apiReactome Pathway Search
Search curated pathways, reactions, and biological entities in Reactome.
Biochemical and metabolic pathways
apiKEGG REST Lookup
Search KEGG entries for pathways, genes, compounds, reactions, enzymes, and modules.
Metabolomics and chemical entities
apiPubChem Compound Lookup
Resolve compounds and retrieve identifiers, formulas, masses, SMILES, InChI, and source links.
Metabolomics and chemical entities
apiChEBI Ontology Lookup
Search ChEBI chemical entities through the EMBL-EBI Ontology Lookup Service.
Metabolomics and chemical entities
apiChEMBL Molecule Search
Search bioactive molecules, drug-like compounds, approvals, synonyms, and ChEMBL identifiers.
Literature and evidence
apiPubMed Evidence Search
Search PubMed for literature connected to genes, organisms, pathways, proteins, and bioengineering topics.
Literature and evidence
apiEurope PMC Literature Search
Search life-science literature across Europe PMC, including abstracts, preprints, books, patents, and open-access records.
Literature and evidence
apiCrossref DOI Metadata Search
Search DOI metadata for articles, books, proceedings, and scholarly records connected to biological evidence trails.
Genomes, RefSeq, GenBank, and annotations
apiEnsembl Genome Feature Lookup
Lookup gene symbols or Ensembl identifiers and retrieve genomic coordinates, transcripts, and feature metadata.
Interaction and association networks
apiSTRING Protein Network Search
Resolve protein names to STRING identifiers and open functional association networks.
Metagenomics and microbiome resources
apiMGnify Microbiome Study Search
Search microbiome and metagenomics studies, including biome metadata and ENA-linked accessions.
Biochemical and metabolic pathways
apiWikiPathways Search
Search pathway references through EBI Search and retrieve official WikiPathways JSON, GPML, and SVG assets when a WPID is supplied.
Metabolomics and chemical entities
apiMetaboLights Study Search
Search public MetaboLights metabolomics study accessions through EBI Search.
Computational models and simulations
apiBioModels Search
Search curated and non-curated mathematical models, including SBML pathway and systems-biology models.
Integration policy
BioCompLab wrappers use official APIs, permitted linkouts, or local visualization components. The portal must not bypass provider authentication, usage policies, rate limits, CORS, or attribution requirements.
Data safety
Users should not submit confidential, clinical, unpublished, controlled, or proprietary sequences to external public services. BioCompLab provides an integrated access layer, not ownership of external data.